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Dear Mr. Weinreich,
Thank you for posting your request on History Hub!
We searched the National Archives Catalog and located the Logbooks of U.S. Navy Ships and Stations, 1941 - 1983 in the Records of the Bureau of Naval Personnel (Record Group 24) that include the deck logs of the USS Yorktown from June 1964 through June 1965. For access to and/or copies of these records please contact the National Archives at College Park - Textual Reference (RDT2) via email at firstname.lastname@example.org.
We hope this information is helpful. Best of luck with your research!